Do some searching, there are some decent how to's. I'll sumarize it. Mount the dial indicator base to the crankshaft(removing one flywheel bolt), make sure the dial indicator isn't at a large angle, rotate the engine 360 degrees and find the high and low point(don't worry about anything else), you take the difference between high and low and divide, if that number is under .005 you're good, if not then you need get offset dowels and move the bellhousing towards your high point. For instance, if your difference is .020 your bellhousing needs to move approx .010 to get it within tolerance.
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Todd
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