Another thing to check is make sure there is no load pressure on the input shaft to the crankshaft, Did the trans slide into the bell housing and seat or did you have to pull it up with the bolts? DO NOT drive the car this way but back the bolts off a little bit on the trans put the car in gear and depress the clutch, try to start it and see if the car wants move, If you have a load problem from the trans to crankshaft DO NOT run the engine at all I have seen it most times take the thrust out of the thrust bearing and or crankshaft, I hope the problem is simple and not this but some thing to look at.
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