The only way to make totally sure is to install the rear end & drive shaft and set the rear end to your desired ride height, then measure the operating angles for the driveshaft & u-joints.
If you're going to run your car low you might have to have the tranny up higher than you'd expect to minimize the u-joint working angles; that's the problem with my Chevelle and how low I have it. I actually need to sawzall off the entire driveshaft tunnel and raise it so I can raise the tailshaft & driveshaft about another 1.5" to minimize the u-joint working angles. Right now I can't because I'm nearly out of room between the driveshaft and the floorpan. I would not have any issues with the working angles if my car was about 2" higher in the rear... but I don't want it to be.
This is something you'd never be able to tell unless you had everything installed & mocked up.
However, getting the engine set to be about 2 degrees down (in relationship to the frame) should get you pretty close, just make sure you have adjustment room either way. The lower your car the greater the chance you're going to have floorpan clearance issues as you'll have to raise the tailshaft to minimize the u-joint working angles.