Old master + new booster or visa versa doesn't really make a difference so long as you don't have excessive clearance between the pushrod and the piston. Typically .01"-.03" is considered safe. You just want to be sure that the MC fully releases at rest, otherwise you can create other issues like caliper drag.
As for overall brake torque, I'd suggest two things if you want to increase it; more agressive pads with a higher coefficient of friction and/or a larger booster. An 11" single diaphragm and dual 8" have about the same effective area. A dual 9" like came on the 98-02 F-bodies would be about a 25% increase in area and as such, increase your pressures accordingly for any given amount of pedal force.
As a side note, if you haven't fully bedded-in your pads and rotors then you're not really giving them a chance. We usually run everything through an initial bed-in process to get things settled in but you still won't see peak performance for another couple hundred miles while you put the rotors through some heat cycles.
Tobin
KORE3
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