This is where your engineering mind can hurt you. It happens to me all the time. Most guys would just bang it together an never have a problem. We think of every worst case scenario known to man.
This isn't the Navy and 90% of my car required clearancing this, tweaking that, etc.... The real defiinition of pro touring should be the mesh of a pile of bastard parts. If you can nudge it on, you don't have a problem, yet.