I work for Ford and here in Nor-Cal,the vehicles come off of a railcar then head to Hadley in Benicia where they are held for delivery.That facility has it's own bodyshop so they repair any transport damage and that is usually never disclosed to the dealers if under a certain dollar amount.
I sold a Mustang once that had a leak around the rear quarter window that we finally traced back to Hadley's poor repair...that one was a mystery for quite sometime.