I have the same computer on my car. I'm using 36# Bosch design III injectors, and I think they need a cleaning. The base tune was way too rich while trying to fire the engine for the first time, and the plugs fouled. The engine sounded much like the symptoms you describe. After changing the plugs and getting the fuel within range, it ran fine. Then, after adding spark control, I had similar problems, but I think this time the problem is a noisy tach signal, because when I disabled spark control (defaults to the base setting) it cleared up. I haven't messed with it since do to other work being done (paint, turbos, etc).
Have you checked the plugs yet? If that's not it, maybe check your ignition signal wiring for problems, or maybe the computer ground. Good luck.
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