the connectors being different is typically easy to correct or adapt by simply procuring the correct connectors and swapping pins/wires. The issue you are going to have deals with the sensors being different in how they work not just their connectors. The LS2 uses different reluctor rings on the crank and cam. You'd have to change those physical parts on the engine in order to do what you want. I'm unaware of any other way to do this other than physically changing the units. IMO, it's not worth it.
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Trey
Current ride: 2001 BMW 540iT soon to be manual swapped.
Former rides: 1979 Trans Am WS6: LT1/T56, Kore 3 C5/6 brakes, BMW 18in rims
00 BMW 540i/6: Suspension, wheels, and ACS bits.
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