In the past when I used a trunk mounted battery I ran the cable along the frame however I have seen some guys using bulkheads and going through the interior of the car. Looking for opinions and or any concerns through the interior.
Through the car with a firewall bulkhead here too. The only downside is that 00 cables are bulky and don't like to turn and you've got two of them. Hiding them under carpeting can be difficult without a lump showing.
Then I installed 3/8 jute on top of my sound deadener and cut it around the cable so they were recessed. If you want you could even tape over them with aluminized tape like I sealed my joints with on the jute. Didn't think it was necessary. Then I used a bulkhead for the positive on the flat shelf above the kick board. Grommet for the negative.
Your main ground should be on the engine. I then have a ground strap to the body from the engine. I'm sure it would work grounded to the frame but from my research running the cable to the engine is superior.